Publications (Showing 2 of 2)

Phylogenomics and the rise of the angiosperms

Nature
2024

Vol. 629, Issue 8013

pp. 843-850

Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods1,2. A robust understanding of angiosperm evolution is required to explain their rise to ecological dominance. So far, the angiosperm tree of life has been determined primarily by means of analyses of the plastid genome3,4. Many studies have drawn on this foundational work, such as classification and first insights into angiosperm diversification since their Mesozoic origins5–7. However, the limited and biased sampling of both taxa and genomes undermines confidence in the tree and its implications. Here, we build the tree of life for almost 8,000 (about 60%) angiosperm genera using a standardized set of 353 nuclear genes8. This 15-fold increase in genus-level sampling relative to comparable nuclear studies9 provides a critical test of earlier results and brings notable change to key groups, especially in rosids, while substantiating many previously predicted relationships. Scaling this tree to time using 200 fossils, we discovered that early angiosperm evolution was characterized by high gene tree conflict and explosive diversification, giving rise to more than 80% of extant angiosperm orders. Steady diversification ensued through the remaining Mesozoic Era until rates resurged in the Cenozoic Era, concurrent with decreasing global temperatures and tightly linked with gene tree conflict. Taken together, our extensive sampling combined with advanced phylogenomic methods shows the deep history and full complexity in the evolution of a megadiverse clade.

DOI:

10.1038/s41586-024-07324-0

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Large-scale phylogenetic analysis of Amorphophallus (Araceae) derived from nuclear and plastid sequences reveals new subgeneric delineation

Botanical Journal of the Linnean Society
2017

Vol. 184, Issue 1

pp. 32-45

Remarkably little is known about the evolution of the emblematic genus Amorphophallus. To shed new light on phylogenetic relationships between species of Amorphophallus and test its current classification, the first well-sampled molecular phylogenetic analysis is presented here, comprising 157 species for which we generate nuclear (ITS1) and plastid (rbcL and matK) sequences. Our combined plastid and nuclear maximum likelihood and Bayesian inferences provide a solid backbone for subgeneric delineation in supporting the existence of four major clades. These latter clades are here formally recognized as subgenera (two of which are new): Amorphophallus, Metandrium, Scutandrium and Afrophallus. Each subgenus is discussed based on selected morphological features and additional traits (e.g. distribution). Finally, our results strongly support the inclusion of the genus Pseudodracontium in Amorphophallus and the required taxonomic changes are proposed here. In addition to clarifying species relationships in Amorphophallus and proposing a new infrageneric classification, this study provides a baseline for researchers working on the evolution and biogeography of Araceae and more broadly on the tropical flora, especially in Southeast Asia.

DOI:

10.1093/botlinnean/box013

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Alexandre Antonelli | Flora of the World