Flora of the World Foundation

Boise, ID, USA

Families Collected

440

Genera Collected

3,324

Species Collected

3,882

Occurrences Recorded

10,175

Countries

51

Photos Taken

232,172

Geographic Distribution (Top 12)

Taxonomy Distribution (Top 15)

Occurrence Locations

Occurrences (10175)

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Occurrence Timeline

Affiliated People (8)

Publications (Showing 5 of 134)

A single widespread species or multiple narrow endemics: a search for boundaries within the Piper amalago complex (Piperaceae)

Molecular Phylogenetics and Evolution
2026

Vol. 214

pp. 108457

The delimitation of species boundaries has been a constant challenge to the fields of systematics, natural history, and conservation biology. Subtle and minor morphological differences in a widespread species complex make delimiting species boundaries particularly difficult. High throughput targeted sequencing of hundreds of loci has allowed researchers to obtain improved insights into evolutionary processes and resolved previously ambiguous phylogenetic relationships. Piper amalago (subgenus Gonistum) is morphologically similar to, and geographically overlaps with, many other Neotropical Piper species that have narrow restricted distributions, or occur as narrow endemics. Taxonomists have debated whether morphological differences between P. amalago and other similar species merit distinct species status or if these taxa represent a single widespread species exhibiting extensive intraspecific variation. Recent molecular analyses demonstrated that P. amalago is paraphyletic with morphologically similar species, notably P. martensianum, but these findings lack phylogenetic support. This study investigates the phylogenetic relationships of P. amalago and several closely related species using multiple DNA sequences, and seeks to determine whether species can be delimited on the basis of phylogenetic, geographical, and morphological information. The Angiosperms353 bait set was used to retrieve nuclear genes to build maximum likelihood and multispecies coalescent phylogenetic hypotheses. Available DNA sequence data are consistent with the presence of a single, monophyletic, widespread species complex, with considerable morphological variation and some geographic structure. While the drivers of the morphological variation within this complex are not yet fully understood, we have a better understanding of evolutionary relationships and species boundaries within Piper, a giant genus.

DOI:

10.1016/j.ympev.2025.108457

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Genomics and phylogenetics inform a species recovery plan for a threatened allopolyploid plant

Botanical Journal of the Linnean Society
2026

Abstract

In the USA, 944 plant taxa are listed as threatened or endangered under the Endangered Species Act. Brassicaceae is the fourth most threatened family with 41 listed species. This study focuses on slickspot peppergrass (Lepidium papilliferum), a threatened Brassicaceae endemic to south-western Idaho that is experiencing significant population decline and reduced fecundity. Our goal is to support the establishment of a breeding and genetic rescue programme to restore populations of this species by addressing the following objectives: (i) confirm its genomic origin, (ii) investigate the importance of ancestral hybridization on its origin, (iii) propose a phylogeographic hypothesis to inform its restoration, and (iv) offer conservation and restoration guidelines. We sampled 44 L. papilliferum individuals from 27 element occurrences (populations) across three landscape management regions, as well as 16 individuals from closely related species. Using Illumina sequencing, we assessed genome size and heterozygosity, and conducted phylogenetic and genetic clustering analyses on nuclear and plastome data. Results showed that L. papilliferum has an allopolyploid origin, with genome size variation and genotype frequencies supporting segmental allopolyploidization. Genomic discordance suggested the occurrence of ancestral hybridization events. Nuclear phylogenetic analysis confirmed the species’ monophyly, possibly because of genetic isolation driven by ecological speciation. We used genetic groups to redefine landscape management regions for the species, offering new boundaries for a forthcoming species recovery plan. This research provides essential genetic insights to inform the restoration of slickspot peppergrass populations and guide conservation efforts.

DOI:

10.1093/botlinnean/boaf116

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Pandanus plastomes decoded: When climate mirrors morphology and phylogenetic relationships

American Journal of Botany
2025

Vol. 112, Issue 2

Premise

Pandanus Parkinson (Pandanaceae) is a large genus of paleotropical tree‐like monocots. Previous studies using small DNA regions questioned the monophyly of the seven Pandanus subgenera, but low phylogenetic branch support hindered further investigations. We aimed to (1) test Pandanus subgeneric monophyly, (2) identify clade morphological synapomorphies, (3) investigate correlations between leaf anatomy of water storage tissue and climatic differentiation across clades, and (4) construct hypotheses on the genus' spatiotemporal history.

Methods

We sequenced 50 Pandanus species using genome skimming and reconstructed plastomes with MITObim. We inferred partitioned RAxML phylogenetic trees to test subgeneric monophyly using Shimodaira–Hasegawa tests. We inferred a partitioned dated BEAST phylogenetic tree used for ancestral state reconstructions of morphological traits. Phylogenetic clades were used to compare climatic (Bioclim) and soil (UNESCO Digital Soil Map) conditions using random forests. We correlated present morphology and climatic niche with past climate events.

Results

Our phylogenetic analyses revealed two clades and four subclades. Only subgenus Coronata was monophyletic. Staminate synapomorphies were identified for three subclades. Hypertrophied and hyperplasic water‐storage tissue was a synapomorphy for clade II, correlating with more seasonal temperature and precipitation regimes and more well‐draining soil. Clades differentiated during the advent of the Southeast Asian monsoon in the early Miocene, whereas subclades differentiated during the Miocene Thermal Maximum.

Conclusions

Pandanus subgeneric classification needs to be revised. Hypertrophied hyperplasic water‐storage tissue is a key trait in Pandanus evolution, possibly explaining climatic and biogeographic patterns because it is key to maintaining photosynthesis during periods of hydric stress.

DOI:

10.1002/ajb2.16461

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Differences in functional traits and drought tolerance between heteromorphic leaves of Artemisia tridentata seedlings, a keystone species from a semiarid shrubland

AoB PLANTS
2025

Vol. 17, Issue 5

Leaf traits are crucial to seedling growth and survival, and their plasticity can influence seedling fitness in changing environments. Seedlings of Artemisia tridentata, a keystone shrub of the western North American sagebrush steppe, show heteromorphic leaf development. Early leaves are larger and less pubescent than those produced later, suggesting a shift from characteristics favouring rapid growth to those increasing drought tolerance. To investigate this hypothesis, we determined the specific leaf area (SLA) and the osmotic potential at full turgor (π0) of early and late leaves, and measured their stomatal conductance and photosynthetic rates as leaf water potential (Ψl) declined under imposed drought. We also examined whether water stress could trigger late leaf development. At high Ψl and per area, early and late leaves had similar photosynthetic rates. However, the SLA of early leaves was three times higher than that of late leaves, yielding higher photosynthetic rates per unit mass in the former. Late leaves had lower π0 and were less sensitive to drought, exhibiting a lower Ψl at 50% of maximum photosynthesis than early leaves. Drought triggered the shedding of early leaves and the initiation of late-like leaves. Formation of these leaves continued upon return to well-watered conditions, possibly indicating stress memory. The overall results suggest that early leaves enhance growth during wet springs following germination, while late leaves prolong photosynthesis as water potentials decline during summer drought. The adaptive value of early leaves may be diminishing due to changing environmental conditions that are accelerating the onset of drought.

DOI:

10.1093/aobpla/plaf051

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