Families Collected

36

Genera Collected

45

Species Collected

34

Occurrences Recorded

73

Countries

1

Photos Taken

0

Occurrences (73)

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Occurrence Timeline

Publications (Showing 4 of 4)

Phylogenomics and the rise of the angiosperms

Nature
2024

Vol. 629, Issue 8013

pp. 843-850

Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods1,2. A robust understanding of angiosperm evolution is required to explain their rise to ecological dominance. So far, the angiosperm tree of life has been determined primarily by means of analyses of the plastid genome3,4. Many studies have drawn on this foundational work, such as classification and first insights into angiosperm diversification since their Mesozoic origins5–7. However, the limited and biased sampling of both taxa and genomes undermines confidence in the tree and its implications. Here, we build the tree of life for almost 8,000 (about 60%) angiosperm genera using a standardized set of 353 nuclear genes8. This 15-fold increase in genus-level sampling relative to comparable nuclear studies9 provides a critical test of earlier results and brings notable change to key groups, especially in rosids, while substantiating many previously predicted relationships. Scaling this tree to time using 200 fossils, we discovered that early angiosperm evolution was characterized by high gene tree conflict and explosive diversification, giving rise to more than 80% of extant angiosperm orders. Steady diversification ensued through the remaining Mesozoic Era until rates resurged in the Cenozoic Era, concurrent with decreasing global temperatures and tightly linked with gene tree conflict. Taken together, our extensive sampling combined with advanced phylogenomic methods shows the deep history and full complexity in the evolution of a megadiverse clade.

DOI:

10.1038/s41586-024-07324-0

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Resolving species boundaries in a recent radiation with the Angiosperms353 probe set: the Lomatium packardiae/L. anomalum clade of the L. triternatum (Apiaceae) complex

American Journal of Botany
2021

Vol. 108, Issue 7

pp. 1217-1233

Premise

Speciation not associated with morphological shifts is challenging to detect unless molecular data are employed. Using Sanger‐sequencing approaches, the Lomatium packardiae/L. anomalum subcomplex within the larger Lomatium triternatum complex could not be resolved. Therefore, we attempt to resolve these boundaries here.

Methods

The Angiosperms353 probe set was employed to resolve the ambiguity within Lomatium triternatum species complex using 48 accessions assigned to L. packardiae, L. anomalum, or L. triternatum. In addition to exon data, 54 nuclear introns were extracted and were complete for all samples. Three approaches were used to estimate evolutionary relationships and define species boundaries: STACEY, a Bayesian coalescent‐based species tree analysis that takes incomplete lineage sorting into account; ASTRAL‐III, another coalescent‐based species tree analysis; and a concatenated approach using MrBayes. Climatic factors, morphological characters, and soil variables were measured and analyzed to provide additional support for recovered groups.

Results

The STACEY analysis recovered three major clades and seven subclades, all of which are geographically structured, and some correspond to previously named taxa. No other analysis had full agreement between recovered clades and other parameters. Climatic niche and leaflet width and length provide some predictive ability for the major clades.

Conclusions

The results suggest that these groups are in the process of incipient speciation and incomplete lineage sorting has been a major barrier to resolving boundaries within this lineage previously. These results are hypothesized through sequencing of multiple loci and analyzing data using coalescent‐based processes.

DOI:

10.1002/ajb2.1676

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Evolutionary origins of three rare alpine-endemic species of Lomatium (Apiaceae) in the Wallowa and Elkhorn mountains of Northeastern Oregon

International Journal of Plant Sciences
2020

Vol. 181, Issue 7

pp. 748-765

Premise of research. Shared ancestry and convergent/parallel evolution are the two primary causes of morphologically similar species occurring in similar climatic niches. Alpine habitats harbor a unique biodiversity that is often characterized by many convergences in life-forms, such as cushion and rosulate habits. Three species of Lomatium (L. greenmanii, L. erythrocarpum, and L. oreganum) are high-alpine specialists endemic to the Wallowa and Elkhorn Mountains of northeastern Oregon. Earlier studies suggested that two of these species might be sister taxa, but because of the prevalence of convergence in alpine habitats and recent studies that have highlighted morphological homoplasy among Lomatium species, this hypothesis warrants reconsideration. Methodology. Phylogenetic analysis of 209 individuals representing 79 taxa belonging to subfamily Apioideae (Apiaceae) was used to investigate the evolutionary origins of three alpine-endemic species of Lomatium. A principal components analysis based on BioClim variables was used to further investigate species climatic niches. Pivotal results. The three alpine-endemic species of Lomatium from northeastern Oregon represent three independent origins of alpine adaptations rather than a single or two alpine radiations, as previously suggested. Conclusions. Convergence and parallelism are especially common in alpine habitats and among Lomatium species, a finding confirmed by this study. This study unveils unpredicted phylogenetic diversity in the Wallowa and Elkhorn Mountains, which, therefore, calls for appropriate conservation measures to protect these distinct evolutionary lineages.

DOI:

10.1086/709373

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Generic delimitations, biogeography and evolution in the tribe Coleeae (Bignoniaceae), endemic to Madagascar and the smaller islands of the western Indian Ocean

Molecular Phylogenetics and Evolution
2016

Vol. 96

pp. 178-186

This study presents the most complete generic phylogenetic framework to date for the tribe Coleeae (Bignoniaceae), which is endemic to Madagascar and the other smaller islands in the western part of the Indian Ocean. The study is based on plastid and nuclear DNA regions and includes 47 species representing the five currently recognized genera (including all the species occurring in the western Indian Ocean region). Bayesian and maximum likelihood analyses supported (i) the monophyly of the tribe, (ii) the monophyly of Phylloctenium, Phyllarthron and Rhodocolea and (iii) the paraphyly of Colea due to the inclusion of species of Ophiocolea. The latter genus was also recovered paraphyletic due to the inclusion of two species of Colea (C. decora and C. labatii). The taxonomic implications of the mutual paraphyly of these two genera are discussed in light of morphological evidence, and it is concluded that the two genera should be merged, and the necessary new nomenclatural combinations are provided. The phylogenetic framework shows Phylloctenium, which is endemic to Madagascar and restricted to dry ecosystems, as basal and sister to the rest of the tribe, suggesting Madagascar to be the centre of origin of this clade. The remaining genera are diversified mostly in humid ecosystems, with evidence of multiple dispersals to the neighboring islands, including at least two to the Comoros, one to Mauritius and one to the Seychelles. Finally, we hypothesize that the ecological success of this tribe might have been triggered by a shift of fruit-dispersal mode from wind to lemur.

DOI:

10.1016/j.ympev.2015.11.016

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Gregory M. Plunkett | Flora of the World